Basic Science Co-Director
James & Jean Culver Vision Discovery Institute
Office: Carl T. Sanders Research and Education Building, CB1123
Phone: 706-721-2015
Lab: 706-721-4843
yutliu@augusta.edu
EducationSelected Honors & AwardsResearch Goals & ApproachesMembersPublications & News/Media
1990-1995 MD Beijing Medical University, Beijing, China
1999-2001 MS Truman State University, Kirksville, MO, USA
2001-2006 PhD University of Tennessee, Knoxville, TN, USA
2006-2010 Postdoctoral Associate, Duke University Medical Center, Durham NC, USA
The Thomas R. Lee Award for National Glaucoma Research, American Health Assistance Foundation, Clarksburg, MA
Annual Educator Award, Division of Medical Genetics, Department of Medicine, Duke University School of Medicine
The long term goal of our laboratory is to dissect age-related genetic diseases (glaucoma and keratoconus) using systematic approaches, including human genetics/epigenetics, functional genomics, and molecular/cellular biology. Our lab has extensive research experience in the area of human genetics, bioinformatics, and functional genomics using several model systems, including human samples, in vitro cell/tissue culture and mouse models. Our research has been published in over 100 peer-reviewed articles, including Nature Genetics, PLoS Genetics, AJHG, PNAS, HMG, IOVS, EER, and Molecular Vision. Our research has been supported by a variety of different organizations, including the National Eye Institute at the National Institute of Health, several private foundations (The Glaucoma Foundation - TGF, the Glaucoma Research Foundation – GRF, the American Health Assistance Foundation – AHAF or BrightFocus, and RPB), and institutional supports.
Our current research is focused on understanding the molecular mechanisms and pathogenesis of two vision-related disorders: keratoconus (KC) and glaucoma. KC, a progressive thinning of the cornea, is the most common corneal ectasia, affecting one in every 500 to 2000 Americans. KC causes moderate to severe astigmatism, nearsightedness, swelling and cornea scarring. It is necessary for 10-20% KC patients to have cornea transplants. Using whole exome and whole genome sequencing, we have identified novel mutations in multiplex KC families. We are characterizing these mutations using primary human corneal cells and transgenic mouse models. We have research collaborations with investigators from California, Iowa, Illinois, Saudi Arabia, Israel, and Duke University in North Carolina. Glaucoma is the leading cause of irreversible blindness worldwide, affecting over 60 million people. It is characterized as a progressive loss of retinal ganglion cells and visual field.
Dr. Liu is a Co-Investigator of the NEIGHBORHOOD glaucoma genetics consortium.
Our lab has been involved in the identification of several glaucoma-associated genes, including but not limited to LOXL1, CDKN2B-AS1, SIX6, GALC, and chr8q22 locus. We are currently using primary human trabecular meshwork cells and other cells under cyclic mechanical stretch to determine their cellular functions in glaucoma. We are also interested in characterizing how the exosomes and its content – miRNA/proteins are involved in the pathogenesis of glaucoma and keratoconus. We have extensive experience in working with exosomes with > 30 peer-reviewed publications since 2013. Our team is highly motivated, cordial, collaborative, and trainee-friendly.
Approaches
We are using a number of advanced cutting-edge technologies, including whole exome/genome sequencing, Total RNA-Seq, small RNA-Seq, genome-wide DNA genotyping/gene expression, realtime PCR, droplet digital PCR, and nanoparticle tracking analysis (NTA) with ZetaView for exosomes and other nanoparticles. Bioinformatics is an important part of our research. We use a number of different bioinformatics tools in our daily research. We also use available mouse models to study both glaucoma and keratoconus by characterizing their ocular phenotypes.
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​ Influence of dexamethasone-induced matrices on the TM transcriptomeSoundappan, K., Cai, J., Yu, H., Dhamodaran, K., Baidouri, H., Vranka, J. A., Xu, H., Raghunathan, V. & Liu, Y., Nov 2024, In: Experimental eye research. 248, 110069.Research output: Contribution to journal › Article › peer-review |
​ Consensus Recommendations for Studies of Outflow Facility and Intraocular Pressure Regulation Using Ex Vivo Perfusion ApproachesAcott, T. S., Fautsch, M. P., Mao, W., Ethier, C. R., Huang, A. S., Kelley, M. J., Aga, M., Bhattacharya, S. K., Borras, T., Bovenkamp, D., Chowdhury, U. R., Clark, A. F., Dibas, M. I., Du, Y., Elliott, M. H., Faralli, J. A., Gong, H., Herberg, S., Johnstone, M. A. & Kaufman, P. L. & 49 others, , Dec 2024, In: Investigative Ophthalmology and Visual Science. 65, 14, 32.Research output: Contribution to journal › Article › peer-review |
​ Polarized desmosome and hemidesmosome shedding via small extracellular vesicles is an early indicator of outer blood-retina barrier dysfunctionHernandez, B. J., Skiba, N. P., Plössl, K., Strain, M., Liu, Y., Grigsby, D., Kelly, U., Cady, M. A., Manocha, V., Maminishkis, A., Watkins, T. J., Miller, S. S., Ashley-Koch, A., Stamer, W. D., Weber, B. H. F., Bowes Rickman, C. & Klingeborn, M., Oct 2023, In: Journal of Extracellular Biology. 2, 10, e116.Research output: Contribution to journal › Article › peer-review |
​ Small Extracellular Vesicle-Associated MiRNAs in Polarized Retinal Pigmented EpitheliumHernandez, B. J., Strain, M., Suarez, M. F., Stamer, W. D., Ashley-Koch, A., Liu, Y., Klingeborn, M. & Rickman, C. B., Nov 2024, In: Investigative Ophthalmology and Visual Science. 65, 13, 57.Research output: Contribution to journal › Article › peer-review |
​ Isolation and Characterization of Exosomes from Ocular SamplesCai, J. & Liu, Y., 2025, Methods in Molecular Biology. Humana Press Inc., p. 63-75 13 p. (Methods in Molecular Biology; vol. 2858).Research output: Chapter in Book/Report/Conference proceeding › Chapter |
​ A perspective from the National Eye Institute Extracellular Vesicle Workshop: Gaps, needs, and opportunities for studies of extracellular vesicles in vision researchLee, S. Y., Klingeborn, M., Bulte, J. W. M., Chiu, D. T., Chopp, M., Cutler, C. W., Das, S., Egwuagu, C. E., Fowler, C. D., Hamm-Alvarez, S. F., Lee, H., Liu, Y., Mead, B., Moore, T. L., Ravindran, S., Shetty, A. K., Skog, J., Witwer, K. W., Djalilian, A. R. & Weaver, A. M., Dec 2024, In: Journal of Extracellular Vesicles. 13, 12, e70023.Research output: Contribution to journal › Article › peer-review |
​ Exfoliation syndrome genetics in the era of post-GWASElsayed, O. A., Cai, J. & Liu, Y., Jan 2025, In: Vision Research. 226, 108518.Research output: Contribution to journal › Article › peer-review |
​ Pro-Inflammatory Characteristics of Extracellular Vesicles in the Vitreous of Type 2 Diabetic PatientsShan, S., Alanazi, A. H., Han, Y., Zhang, D., Liu, Y., Narayanan, S. P. & Somanath, P. R., Sep 2024, In: Biomedicines. 12, 9, 2053.Research output: Contribution to journal › Article › peer-review |
​ Src family kinases engage differential pathways for encapsulation into extracellular vesiclesYe, C., Gosser, C., Runyon, E. D., Zha, J., Cai, J., Beharry, Z., Bowes Rickman, C., Klingeborn, M., Liu, Y., Xie, J. & Cai, H., Jun 2023, In: Journal of Extracellular Biology. 2, 6, e96.Research output: Contribution to journal › Article › peer-review |
​ Exploring New Links Among Keratoconus, Hormonal Factors, and Medications: Insights From a Case–Control Study Utilizing the All of Us DatabaseBeatty, C., Estes, A., Xu, H. & Liu, Y., Nov 2024, In: Translational Vision Science and Technology. 13, 11, 18.Research output: Contribution to journal › Article › peer-review |
​ Identification of Keratoconus-Related Phenotypes in Three Ppip5k2 Mouse ModelsAkoto, T., Hadvina, R., Jones, S., Cai, J., Yu, H., McCord, H., Jin, C. X. J., Estes, A. J., Gan, L., Kuo, A., Smith, S. B. & Liu, Y., Jun 2024, In: Investigative Ophthalmology and Visual Science. 65, 6, 22.Research output: Contribution to journal › Article › peer-review |
​ Evaluation of Novel Nasal Mucoadhesive Nanoformulations Containing Lipid-Soluble EGCG for Long COVID TreatmentFrank, N., Dickinson, D., Lovett, G., Liu, Y., Yu, H., Cai, J., Yao, B., Jiang, X. & Hsu, S., Jun 2024, In: Pharmaceutics. 16, 6, 791.Research output: Contribution to journal › Article › peer-review |
​ The impact of ischemic stroke on bone marrow microenvironment and extracellular vesicles: A study on inflammatory and molecular changesPatel, S., Khan, M. B., Kumar, S., Vyavahare, S., Mendhe, B., Lee, T. J., Cai, J., Isales, C. M., Liu, Y., Hess, D. C. & Fulzele, S., Sep 2024, In: Experimental Neurology. 379, 114867.Research output: Contribution to journal › Article › peer-review |
​ Oral Microbially-Induced Small Extracellular Vesicles Cross the Blood-Brain BarrierElashiry, M., Carroll, A., Yuan, J., Liu, Y., Hamrick, M. W., Cutler, C. W., Wang, Q. & Elsayed, R., Apr 20 2024, In: International journal of molecular sciences. 25, 8Research output: Contribution to journal › Article › peer-review |
​ Animal Models for the Study of KeratoconusHadvina, R., Estes, A. & Liu, Y., Dec 2023, In: Cells. 12, 23, 2681.Research output: Contribution to journal › Review article › peer-review |
​ Feasibility Study of Developing a Saline-Based Antiviral Nanoformulation Containing Lipid-Soluble EGCG: A Potential Nasal Drug to Treat Long COVIDFrank, N., Dickinson, D., Garcia, W., Liu, Y., Yu, H., Cai, J., Patel, S., Yao, B., Jiang, X. & Hsu, S., Feb 2024, In: Viruses. 16, 2, 196.Research output: Contribution to journal › Article › peer-review |
​ Mechanosensitive ion channel gene survey suggests potential roles in primary open angle glaucomaNEIGHBORHOOD Consortium, Dec 2023, In: Scientific reports. 13, 1, 15871.Research output: Contribution to journal › Article › peer-review |
​ Homocysteine and GlaucomaWashington, J., Ritch, R. & Liu, Y., Jul 2023, In: International journal of molecular sciences. 24, 13, 10790.Research output: Contribution to journal › Review article › peer-review |
​ Electrical Stimulation Increases the Secretion of Cardioprotective Extracellular Vesicles from Cardiac Mesenchymal Stem CellsZhang, H., Shen, Y., Kim, I.-M., Liu, Y., Cai, J., Berman, A. E., Nilsson, K. R., Weintraub, N. L. & Tang, Y., Mar 2023, In: Cells. 12, 6, 875.Research output: Contribution to journal › Article › peer-review |
​ Defining the ligand-dependent proximatome of the sigma 1 receptorZhao, J., Veeranan-Karmegam, R., Baker, F. C., Mysona, B. A., Bagchi, P., Liu, Y., Smith, S. B., Gonsalvez, G. B. & Bollinger, K. E., 2023, In: Frontiers in Cell and Developmental Biology. 11, 1045759.Research output: Contribution to journal › Article › peer-review |
​ The genetics of primary open-angle glaucoma: A reviewAllingham, R. R. & Liu, Y., Jan 1 2010, Encyclopedia of the Eye. Elsevier, p. 217-221 5 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter |
​ Exosomes and their miRNA/protein profile in keratoconus-derived corneal stromal cellsHadvina, R., Lotfy Khaled, M., Akoto, T., Zhi, W., Karamichos, D. & Liu, Y., Nov 2023, In: Experimental eye research. 236, 109642.Research output: Contribution to journal › Article › peer-review |
​ Estrogen dysregulation, intraocular pressure, and glaucoma riskYoungblood, H., Schoenlein, P. V., Pasquale, L. R., Stamer, W. D. & Liu, Y., Dec 2023, In: Experimental eye research. 237, 109725.Research output: Contribution to journal › Review article › peer-review |
​ Genetic Correlations Among Corneal Biophysical Parameters and Anthropometric TraitsCousins, H. C., Cousins, C. C., Valluru, G., Altman, R. B., Liu, Y., Pasquale, L. R. & Ahmad, S., Aug 1 2023, In: Translational Vision Science and Technology. 12, 8, 8.Research output: Contribution to journal › Article › peer-review |
​ Glaucomatous aqueous humor vesicles are smaller and differ in composition compared to controlsMueller, A., Anter, A., Edwards, G., Junk, A. K., Liu, Y., Ziebarth, N. & Bhattacharya, S. K., Sep 2023, In: Experimental eye research. 234, 109562.Research output: Contribution to journal › Article › peer-review |
​ Mitochondrial TXNRD2 and ME3 Genetic Risk Scores Are Associated with Specific Primary Open-Angle Glaucoma PhenotypesNEIGHBORHOOD Consortium, Jul 2023, In: Ophthalmology. 130, 7, p. 756-763 8 p.Research output: Contribution to journal › Article › peer-review |
​ Transcriptome Analysis of Retinal and Choroidal Pathologies in Aged BALB/c Mice Following Systemic Neonatal Murine Cytomegalovirus InfectionZhang, X., Xu, J., Marshall, B., Dong, Z., Liu, Y., Espinosa-Heidmann, D. G. & Zhang, M., Mar 2023, In: International journal of molecular sciences. 24, 5, 4322.Research output: Contribution to journal › Article › peer-review |
​ Potential underlying genetic associations between keratoconus and diabetes mellitusAtes, K. M., Estes, A. J. & Liu, Y., Nov 2021, In: Advances in Ophthalmology Practice and Research. 1, 1, 100005.Research output: Contribution to journal › Review article › peer-review |
​ Engineered Human Dendritic Cell Exosomes as Effective Delivery System for Immune ModulationElsayed, R., Elashiry, M., Tran, C., Yang, T., Carroll, A., Liu, Y., Hamrick, M. & Cutler, C. W., Jul 2023, In: International journal of molecular sciences. 24, 14, 11306.Research output: Contribution to journal › Article › peer-review |
​ Microbially-Induced Exosomes from Dendritic Cells Promote Paracrine Immune Senescence: Novel Mechanism of Bone Degenerative Disease in MiceElsayed, R., Elashiry, M., Liu, Y., Morandini, A. C., El-Awady, A., Elashiry, M. M., Hamrick, M. & Cutler, C. W., Feb 1 2023, In: Aging and Disease. 14, 1, p. 136-151 16 p.Research output: Contribution to journal › Article › peer-review |
For a detailed list of recent publications, please refer to NCBI My Bibliography
*** Please note that some of the listed publications were included as the NEI P30-supported studies but not as a co-author since Dr. Liu is the PI of the P30 grant. These should be treated as P30-supported publications ONLY.